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1.
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2025/10
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論文
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Giant genome of the vampire squid reveals the derived state of modern octopod karyotypes iScience （単著）
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2.
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2025/09
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論文
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Genomic characterization of two Faecalibacterium strains isolated from a healthy Japanese individual Microbiology Resource Announcements 14(9),pp.e0054825 （単著）
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3.
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2025/06
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論文
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A deletion at the X-linked ARHGAP36 gene locus is associated with the orange coloration of tortoiseshell and calico cats Current Biology 35(12),pp.2816-2825 （単著）
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4.
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2024/11
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論文
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Epigenetic dynamics of partially methylated domains in human placenta and trophoblast stem cells BMC Genomics 25(1),pp.1050 （単著）
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5.
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2024/10
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論文
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Cholesterol sulfate prevents maternal–fetal conflict by locally modulating immune reactivity bioRxiv (preprint) pp.2024.10.11.617779 （単著）
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6.
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2024/09
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論文
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Mitochondrial phylogeny and distribution of cytoplasmic male sterility-associated genes in Beta vulgaris PLOS ONE 19(9),pp.e0308551 （単著）
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7.
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2024/08
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論文
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A novel C-terminal truncated bacteriocin found by comparison between Leuconostoc mesenteroides 406 and 213M0 isolated from Mongolian traditional fermented milk, Airag Microorganisms 12(9),pp.1781 （単著）
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8.
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2024/01
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論文
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Spatiotemporal DNA methylation dynamics shape megabase-scale methylome landscapes Life Science Alliance 7(4),pp.e202302403 （単著）
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9.
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2023/11
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論文
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Isolation and genomic analysis of a type IV pili-independent Thermus thermophilus phage, φMN1 from a Japanese hot spring The Journal of General and Applied Microbiology 69(2),pp.117-124 （単著）
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10.
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2023/08
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論文
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The DNMT3A ADD domain is required for efficient de novo DNA methylation and maternal imprinting in mouse oocytes PLOS Genetics 19(8),pp.e1010855 （単著）
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11.
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2022/09
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論文
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CMIC: predicting DNA methylation inheritance of CpG islands with embedding vectors of variable-length k-mers BMC Bioinformatics 23(1),pp.371 （単著）
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12.
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2021/05
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論文
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The DNMT3A PWWP domain is essential for the normal DNA methylation landscape in mouse somatic cells and oocytes PLOS Genetics 17(5),pp.e1009570 （単著）
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13.
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2020/01
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論文
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Non-transmissible MV vector with segmented RNA genome establishes different types of iPSCs from hematopoietic cells. Molecular Therapy 28(1),pp.129-141 （単著）
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14.
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2019/10
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論文
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Broad heterochromatic domains open in gonocyte development prior to de novo DNA methylation Developmental Cell 51(1),pp.21-34 （単著）
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15.
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2019/08
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論文
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Aging of spermatogonial stem cells by Jnk-mediated glycolysis activation Proceedings of the National Academy of Sciences USA 116(33),pp.16404-16409 （単著）
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16.
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2019/06
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論文
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Draft genome sequence of Butyricimonas faecihominis 30A1, isolated from feces of a Japanese Alzheimer's disease patient. Microbiology Resource Announcements 8(23),pp.e00462-19 （単著）
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17.
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2018/10
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論文
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Microbiota community structure in traditional fermented milk dadiah in Indonesia: Insights from high-throughput 16S rRNA gene sequencing Milk Science International 71,pp.1-3 （単著）
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18.
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2018/08
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論文
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エピジェネティクスと国際ヒトエピゲノムコンソーシアム 医学のあゆみ 266(5),475-478頁 （単著）
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19.
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2018/01
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論文
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Derivation of human trophoblast stem cells Cell Stem Cell 22(1),pp.50-63 （単著）
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20.
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2017/10
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論文
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Role of UHRF1 in de novo DNA methylation in oocytes and maintenance methylation in preimplantation embryos PLOS Genetics 13(10),pp.e1007042 （単著）
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21.
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2017/02
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論文
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Draft genome sequence of Bifidobacterium lemurum DSM 28807T isolated from the gastrointestinal tracts of ring-tailed lemurs (Lemur catta) Genome Announcements 5(8),pp.e01656-16 （単著）
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22.
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2017/01
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論文
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Roles of MIWI, MILI and PLD6 in small RNA regulation in mouse growing oocytes Nucleic Acids Research 45(9),pp.5387-5398 （単著）
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23.
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2017/01
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論文
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Software updates in the illumina hiseq platform affect whole-genome bisulfite sequencing BMC Genomics 18(1),pp.31 （単著）
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24.
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2016/12
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論文
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Draft genome sequence of probiotic Lactobacillus acidophilus strain L-55 isolated from a healthy human gut Genome Announcements 4(6),pp.e01357-16 （単著）
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25.
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2016/11
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論文
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Allele-specific methylome and transcriptome analysis reveals widespread imprinting in the human placenta American Journal of Human Genetics 99(5),pp.1045-1058 （単著）
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26.
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2016/04
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論文
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Draft genome sequence of Leuconostoc mesenteroides 213M0, isolated from traditional fermented mare Milk Airag in Bulgan Aimag, Mongolia Genome Announcements 4(2),pp.e00178-16 （単著）
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27.
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2016/04
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論文
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Draft genome sequence of Leuconostoc mesenteroides 406 isolated from the traditional fermented mare milk Airag in Tuv Aimag, Mongolia Genome Announcements 4(2),pp.e00166-16 （単著）
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28.
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2016/02
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論文
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Draft genome sequence of coccoid Lactobacillus equigenerosi NRIC 0697T isolated from the gastrointestinal tracts of healthy thoroughbreds Genome Announcements 4(1),pp.e01679-15 （単著）
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29.
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2016/02
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論文
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Draft genome sequence of Streptococcus orisasini SH06, isolated from a healthy Thoroughbred gastrointestinal tract Genome Announcements 4(1),pp.e01566-15 （単著）
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30.
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2015/12
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論文
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Draft genome sequence of Bifidobacterium aesculapii DSM 26737T, isolated from feces of baby common marmoset Genome Announcements 3(6),pp.e01463-15 （単著）
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31.
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2015/12
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論文
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国際ヒトエピゲノムコンソーシアムの現状と展開 ホルモンと臨床 62,141-144頁 （単著）
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32.
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2015/11
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論文
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Complete genome sequence of Lactobacillus acetotolerans RIB 9124 (NBRC 13120) isolated from putrefied (hiochi) Japanese sake Journal of Biotechnology 214,pp.214-215 （単著）
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33.
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2015/10
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論文
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Complete genome sequence of Bifidobacterium angulatum JCM 7096(T) isolated from human feces Journal of Biotechnology 211,pp.10-11 （単著）
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34.
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2015/09
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論文
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Complete genome sequence of Bifidobacterium bifidum JCM 1255T isolated from feces of a breast-fed infant Journal of Biotechnology 210,pp.66-67 （単著）
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35.
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2015/09
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論文
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Complete genome sequence of Bifidobacterium breve JCM 1192T isolated from infant feces Journal of Biotechnology 210,pp.81-82 （単著）
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36.
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2015/09
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論文
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Complete genome sequence of Bifidobacterium catenulatum JCM 1194T isolated from human feces Journal of Biotechnology 210,pp.25-26 （単著）
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37.
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2015/09
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論文
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Complete genome sequence of Bifidobacterium pseudocatenulatum JCM 1200T isolated from infant feces Journal of Biotechnology 210,pp.68-69 （単著）
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38.
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2015/08
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論文
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DNA methylation and gene expression dynamics during spermatogonial stem cell differentiation in the early postnatal mouse testis BMC Genomics 16(1),pp.624 （単著）
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39.
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2015/06
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論文
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Complete genome sequence of Scardovia inopinata JCM 12537T, isolated from human dental caries Genome Announcements 3(3),pp.e00481-15 （単著）
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40.
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2015/05
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論文
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Complete genome sequence of Parascardovia denticolens JCM 12538T, isolated from human dental caries Genome announcements 3(3),pp.e00485-15 （単著）
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41.
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2015/04
|
論文
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Complete genome sequence of Bifidobacterium dentium strain JCM 1195T, isolated from human dental caries Genome Announcements 3(2),pp.e00284-15 （単著）
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42.
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2015/04
|
論文
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Complete genome sequence of Bifidobacterium kashiwanohense JCM 15439T, isolated from feces from a healthy Japanese infant Genome Announcements 3(2),pp.e00255-15 （単著）
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43.
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2015/04
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論文
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Complete genome sequence of Bifidobacterium scardovii strain JCM 12489T, isolated from human blood Genome Announcements 3(2),pp.e00285-15 （単著）
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44.
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2015/04
|
論文
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Complete genome sequence of Gardnerella vaginalis strain JCM 11026T, isolated from vaginal tracts of women Genome Announcements 3(2),pp.e00286-15 （単著）
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45.
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2014/06
|
論文
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Physiological and genetic basis for self-aggregation of a thermophilic hydrogenotrophic methanogen, Methanothermobacter strain CaT2 Environmental Microbiology Reports 6(3),pp.268-277 （単著）
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46.
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2014/02
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論文
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Complete sequence analysis of two cryptic plasmids from Bifidobacterium kashiwanohense JCM 15439 (type strain) isolated from healthy infant feces Animal Science Journal 85(2),pp.158-163 （単著）
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47.
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2014/02
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論文
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Draft genome sequence of Lactobacillus namurensis Chizuka 01, isolated from Nukadoko, a pickling bed of fermented rice bran Genome Announcements 2(1),pp.e01263-13 （単著）
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48.
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2013/10
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論文
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Genomic adaptation of the Lactobacillus casei group PLOS ONE 8(10),pp.e75073 （単著）
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49.
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2013/09
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論文
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Complete genome sequence of the equol-producing bacterium Adlercreutzia equolifaciens DSM 19450T Genome Announcements 1(5),pp.e00742-13 （単著）
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50.
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2013/09
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論文
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Complete genomic DNA sequence of the east asian spotted fever disease agent Rickettsia japonica PLOS ONE 8(9),pp.e71861 （単著）
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51.
|
2013/08
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論文
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Complete genome sequence of a thermophilic hydrogenotrophic methanogen, Methanothermobacter sp. strain CaT2 Genome Announcements 1(4),pp.e00672-13 （単著）
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52.
|
2013/04
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論文
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Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases PLOS Genetics 9(4),pp.e1003439 （単著）
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53.
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2013/03
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論文
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Genomic analysis by deep sequencing of the probiotic Lactobacillus brevis KB290 harboring nine plasmids reveals genomic stability PLOS ONE 8(3),pp.e60521 （単著）
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54.
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2012/11
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論文
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An atomic model of Zfp57 recognition of CpG methylation within a specific DNA sequence Genes & Development 26(21),pp.2374-2379 （単著）
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55.
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2012/09
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論文
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Acetate-producing bifidobacteria protect the host from enteropathogenic infection via carbohydrate transporters Gut Microbes 3(5),pp.449-454 （単著）
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56.
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2012/09
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論文
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Complete genome sequence of Bacillus cereus NC7401, which produces high levels of the emetic toxin cereulide Journal of Bacteriology 194(17),pp.4767-4768 （単著）
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57.
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2012/06
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論文
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Anammox organism KSU-1 expresses a NirK-type copper-containing nitrite reductase instead of a NirS-type with cytochromecd1 FEBS Letters 586(11),pp.1658-1663 （単著）
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58.
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2012/05
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論文
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Comparative genomic analysis of Lactococcus garvieae strains Isolated from different sources reveals candidate virulence genes International Journal of Microbiology 2012,pp.728276 （単著）
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59.
|
2012/03
|
著書
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微生物機能学 （単著）
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60.
|
2011/11
|
論文
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Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faeces International Journal of Systematic and Evolutionary Microbiology 61(11),pp.2610-2615 （単著）
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61.
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2011/11
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論文
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Complete genome sequences of Arcobacter butzleri ED-1 and Arcobacter sp. strain L, both isolated from a microbial fuel cell Journal of Bacteriology 193(22),pp.6411-6412 （単著）
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62.
|
2011/08
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論文
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Complete genome sequence and comparative analysis of the fish pathogen Lactococcus garvieae PLOS ONE 6(8),pp.e23184 （単著）
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63.
|
2011/05
|
論文
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Genomic and proteomic characterization of the large Myoviridae bacteriophage ϕTMA of the extreme thermophile Thermus thermophilus Bacteriophage 1(3),pp.152-164 （単著）
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64.
|
2011/01
|
著書
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メタゲノム解析技術の最前線 （共著）
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65.
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2011/01
|
論文
|
Bifidobacteria can protect from enteropathogenic infection through production of acetate Nature 469(7331),pp.543-549 （単著）
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66.
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2010/03
|
論文
|
ヒト腸内細菌のゲノム情報に基づく機能解析と生体影響 : 第2報 麻布大学雑誌 19-20(19),121-123頁 （単著）
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67.
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2010/02
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著書
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同上 １ （共著）
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68.
|
2010/02
|
著書
|
同上 ２ （共著）
|
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69.
|
2010/02
|
著書
|
乳酸菌とビフィズス菌のサイエンス （共著）
|
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70.
|
2010/02
|
論文
|
Complete genome sequence of the wild-type commensal Escherichia coli strain SE15, belonging to phylogenetic group B2 Journal of Bacteriology 192(4),pp.1165-1166 （単著）
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71.
|
2010/01
|
論文
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Lactobacillus equicursoris sp. nov., isolated from the faeces of a thoroughbred racehorse International Journal of Systematic and Evolutionary Microbiology 60(1),pp.109-112 （単著）
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72.
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2009/12
|
論文
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Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103 Journal of Bacteriology 191(24),pp.7630-7631 （単著）
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73.
|
2009/10
|
論文
|
Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli Proceedings of the National Academy of Sciences USA 106(42),pp.17939-17944 （単著）
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74.
|
2009/05
|
論文
|
Lactobacillus hayakitensis, L. equigenerosi and L. equi, predominant lactobacilli in the intestinal flora of healthy thoroughbreds Animal Science Journal 80(3),pp.339-346 （単著）
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75.
|
2009/03
|
論文
|
ヒト腸内細菌のゲノム情報に基づく機能解析と生体影響：第1報 麻布大学雑誌 17-18,239-241頁 （単著）
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76.
|
2008/12
|
論文
|
Sharpea azabuensis gen. nov., sp. nov., a Gram-positive, strictly anaerobic bacterium isolated from the faeces of thoroughbred horses International Journal of Systematic and Evolutionary Microbiology 58(12),pp.2682-2686 （単著）
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77.
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2008/11
|
論文
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Genome of an endosymbiont coupling N2 fixation to cellulolysis within protist cells in termite gut Science 322(5904),pp.1108-1109 （単著）
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78.
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2008/10
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論文
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Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult DNA Research 15(6),pp.375-386 （単著）
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79.
|
2008/05
|
論文
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Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production DNA Research 15(3),pp.151-161 （単著）
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80.
|
2008/05
|
論文
|
Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis DNA Research 15(4),pp.215-225 （単著）
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81.
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2008/03
|
論文
|
有用細菌(乳酸菌等)の全ゲノム塩基配列決定,比較ゲノム解析および有用遺伝子の機能解明 : 第5報 麻布大学雑誌 15-16(15),305-308頁 （単著）
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82.
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2008/02
|
論文
|
Complete genome sequence of Finegoldia magna, an anaerobic opportunistic pathogen DNA Research 15(1),pp.39-47 （単著）
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83.
|
2008/01
|
論文
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Genome-wide analysis of Chlamydophila pneumoniae gene expression at the late stage of Infection DNA Research 15(2),pp.83-91 （単著）
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84.
|
2007/09
|
著書
|
乳酸菌の保健機能と応用 （共著）
|
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85.
|
2007/08
|
論文
|
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes DNA Research 14(4),pp.169-181 （単著）
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86.
|
2007/08
|
論文
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乳酸菌のゲノム解析の進展 腸内細菌学雑誌 21,209-215頁 （単著）
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87.
|
2007/03
|
著書
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プロバイオティクスとバイオジェニクス （共著）
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88.
|
2006/10
|
論文
|
The 160-kilobase genome of the bacterial endosymbiont Carsonella Science 314(5797),pp.267-267 （単著）
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89.
|
2006/02
|
論文
|
Genome sequence of the cat pathogen, Chlamydophila felis DNA Research 13(1),pp.15-23 （単著）
|
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90.
|
2006/02
|
論文
|
Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host Genome Research 16(2),pp.149-156 （単著）
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91.
|
2006
|
論文
|
有用細菌(乳酸菌等)の全ゲノム塩基配列決定,比較ゲノム解析および有用遺伝子の機能解明：第4報 麻布大学雑誌 13,318-324頁 （単著）
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92.
|
2005/09
|
論文
|
Whole genome sequence of Staphylococcus saprophyticus reveals the pathogenesis of uncomplicated urinary tract infection Proceedings of the National Academy of Sciences USA 102(37),pp.13272-13277 （単著）
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93.
|
2005
|
論文
|
有用細菌(乳酸菌等)の全ゲノム塩基配列決定,比較ゲノム解析および有用遺伝子の機能解明 : 第3報 麻布大学雑誌 11,247-251頁 （単著）
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94.
|
2004/10
|
論文
|
Genomic analysis of Bacteroides fragilis reveals extensive DNA inversions regulating cell surface adaptation Proceedings of the National Academy of Sciences USA 101(41),pp.14919-14924 （単著）
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95.
|
2003/02
|
論文
|
In silico inference of inclusion membrane protein family in obligate intracellular parasites chlamydiae DNA Research 10(1),pp.9-17 （単著）
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96.
|
2002/03
|
著書
|
実地医家のためのクラミジア・ニューモニエ感染症 基礎と臨床 （共著）
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|
97.
|
2001/10
|
論文
|
細菌のゲノム解読と臨床への利用 クラミジア 臨床と微生物 28,773-778頁 （単著）
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98.
|
2001
|
論文
|
Molecular dynamics simulations of HLA-DR4 (DRB1*0405) complexed with analogue peptide. Recent Research Developments in Protein Engineering 1(1),pp.213-227 （単著）
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99.
|
2000/11
|
論文
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Glycine-rich region of mitochondrial processing peptidase α-subunit is essential for binding and cleavage of the precursor proteins Journal of Biological Chemistry 275(44),pp.34552-34556 （単著）
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100.
|
2000/10
|
論文
|
Changes at the floor of the peptide-binding groove induce a strong preference for Proline at position 3 of the bound peptide: Molecular dynamics simulations of HLA-A*0217 Biopolymers 54(5),pp.318-327 （単著）
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101.
|
2000/06
|
論文
|
Magnitude of structural changes of the T-cell receptor binding regions determine the strength of T-cell antagonism: molecular dynamics simulations of HLA-DR4 (DRB1*0405) complexed with analogue peptide Protein Engineering, Design and Selection 13(6),pp.423-429 （単著）
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102.
|
1998/11
|
論文
|
Molecular dynamics simulations of HLA-DR4 (DRB1*0405) complexed with analogue peptide: conformational changes in the putative T-cell receptor binding regions Protein Engineering, Design and Selection 11(11),pp.1027-1032 （単著）
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